# Publications Search Within Results Search Within Results search ## 285 results Show filters filter\_alt Sort by Year of PublicationAlphabetical A-Z sort ## 285 results Download 285 citations download- [BibTeX](/node/1605486/export?format=bibtex) - [EndNote X3 XML](/node/1605486/export?format=endnote8) - [EndNote 7 XML](/node/1605486/export?format=endnote7) - [Endnote tagged](/node/1605486/export?format=tagged) - [Marc](/node/1605486/export?format=marc) - [PubMedId](/node/1605486/export?format=pubmed_id) - [RIS](/node/1605486/export?format=ris) ### Working Paper Nicolai M, Debruyn G, Bowie R, Edwards S, Carneiro M, D’Alba L, Shawkey M. [The evolution of brilliant iridescence in birds](https://doi.org/10.21203/rs.3.rs-8020267/v1). 2025. doi:https://doi.org/10.21203/rs.3.rs-8020267/v1 Nicolai M, Debruyn G, Bowie R, Edwards S, Carneiro M, D’Alba L, Shawkey M. [The evolution of brilliant iridescence in birds](https://doi.org/10.21203/rs.3.rs-8020267/v1). 2025. doi:https://doi.org/10.21203/rs.3.rs-8020267/v1 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.researchsquare.com/article/rs-8020267/v1) Colors of iridescent feathers are some of the most striking in nature, but when and how they evolved remains elusive. Using a dataset of 71,536 body patches from 5,755 bird species, we reconstruct the evolution of iridescence. We find that brilliant... - [ descriptionPublisher's Version](https://www.researchsquare.com/article/rs-8020267/v1) ### 2026 Lopez KA, de Carvalho CF, de Lima HS, Naka LN, Amaral FR do, Bravo GA, Edwards S V. [Pangenomes reveal extensive structural variation in a suboscine passerine bird, the Pearly-vented Tody-Tyrant (Hemitriccus margaritaceiventer)](https://doi.org/10.1093/genetics/iyag109). Genetics. 2026. doi:10.1093/genetics/iyag109 Lopez KA, de Carvalho CF, de Lima HS, Naka LN, Amaral FR do, Bravo GA, Edwards S V. [Pangenomes reveal extensive structural variation in a suboscine passerine bird, the Pearly-vented Tody-Tyrant (Hemitriccus margaritaceiventer)](https://doi.org/10.1093/genetics/iyag109). Genetics. 2026. doi:10.1093/genetics/iyag109 - [ descriptionPublisher's Version](https://academic.oup.com/genetics/advance-article-abstract/doi/10.1093/genetics/iyag109/8666445) - [ descriptionPublisher's Version](https://academic.oup.com/genetics/advance-article-abstract/doi/10.1093/genetics/iyag109/8666445) Edwards S V, Li H. [Population-scale long-read DNA sequencing: peering under the hood of the new evolutionary genomics](https://doi.org/10.1098/rspb.2025.2899). Proceedings of the Royal Society B. 2026;293. doi:https://doi.org/10.1098/rspb.2025.2899 Edwards S V, Li H. [Population-scale long-read DNA sequencing: peering under the hood of the new evolutionary genomics](https://doi.org/10.1098/rspb.2025.2899). Proceedings of the Royal Society B. 2026;293. doi:https://doi.org/10.1098/rspb.2025.2899 - [ descriptionPublisher's Version](https://royalsocietypublishing.org/rspb/article/293/2069/20252899/481431/Population-scale-long-read-DNA-sequencing-peering) - [ picture\_as\_pdf\[PDF\]](/sites/g/files/omnuum6356/files/2026-05/rspb.2025.2899.pdf) - [ descriptionPublisher's Version](https://royalsocietypublishing.org/rspb/article/293/2069/20252899/481431/Population-scale-long-read-DNA-sequencing-peering) - [ picture\_as\_pdf\[PDF\]](/sites/g/files/omnuum6356/files/2026-05/rspb.2025.2899.pdf) Sutherland WJ, Burgess ND, Edwards S V, Jones JP, Soltis PS, Tilman D, Allen JM, Andrianandrasana HT, Armour CJ, August T, et al. [Nine changes needed to deliver a radical transformation in biodiversity measurement](https://doi.org/10.1073/pnas.251934512). Proceedings of the National Academy of Sciences. 2026;123(10). Sutherland WJ, Burgess ND, Edwards S V, Jones JP, Soltis PS, Tilman D, Allen JM, Andrianandrasana HT, Armour CJ, August T, et al. [Nine changes needed to deliver a radical transformation in biodiversity measurement](https://doi.org/10.1073/pnas.251934512). Proceedings of the National Academy of Sciences. 2026;123(10). - [ picture\_as\_pdfPDF](/sites/g/files/omnuum6356/files/2026-05/sutherland-et-al-2026-nine-changes-needed-to-deliver-a-radical-transformation-in-biodiversity-measurement.pdf) - [ picture\_as\_pdfPDF](/sites/g/files/omnuum6356/files/2026-05/sutherland-et-al-2026-nine-changes-needed-to-deliver-a-radical-transformation-in-biodiversity-measurement.pdf) Fang B, Edwards S V. [Pangenomes: new tools for ecological and evolutionary genomics](https://doi.org/10.1016/j.tree.2025.11.010). Trends in Ecology & Evolution. 2026;41(3):p230–244. doi: https://doi.org/10.1016/j.tree.2025.11.010 Fang B, Edwards S V. [Pangenomes: new tools for ecological and evolutionary genomics](https://doi.org/10.1016/j.tree.2025.11.010). Trends in Ecology & Evolution. 2026;41(3):p230–244. doi: https://doi.org/10.1016/j.tree.2025.11.010 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.cell.com/trends/ecology-evolution/abstract/S0169-5347(25)00344-1) Genomic structural variation is an important component of genetic variation in natural populations. By assembling and analyzing multiple high-quality genomes within a species or clade, pangenomes capture variation that can be missed by reference-based... - [ descriptionPublisher's Version](https://www.cell.com/trends/ecology-evolution/abstract/S0169-5347(25)00344-1) Boria RA, Wooldridge B, Kautt AF, Ashing-Giwa K, McFadden S, Kirby C, Edwards S V, Hoekstra HE. [Pleistocene climatic oscillations impact the diversification of deer mice (Peromyscus maniculatus) and the independent evolution of ecotypes](https://doi.org/10.64898/2026.01.26.699144). bioRxiv. 2026. Boria RA, Wooldridge B, Kautt AF, Ashing-Giwa K, McFadden S, Kirby C, Edwards S V, Hoekstra HE. [Pleistocene climatic oscillations impact the diversification of deer mice (Peromyscus maniculatus) and the independent evolution of ecotypes](https://doi.org/10.64898/2026.01.26.699144). bioRxiv. 2026. - add\_circle\_outline do\_not\_disturb\_on Abstract - [ picture\_as\_pdfPDF](/sites/g/files/omnuum6356/files/2026-05/2026.01.26.699144v1.full_.pdf) A central question in evolutionary biology is whether local adaptation is predictable when a species repeatedly encounters similar environments. The deer mouse, *Peromyscus maniculatus*, has a range of over 13 million km2 in North America and may be found... - [ picture\_as\_pdfPDF](/sites/g/files/omnuum6356/files/2026-05/2026.01.26.699144v1.full_.pdf) Fang B, Edwards S V. [Inferring Species Trees](/publication/inferring-species-trees). Academic Press. 2026:147–157. doi:https://doi.org/10.1016/B978-0-443-15750-9.00174-9 Fang B, Edwards S V. [Inferring Species Trees](/publication/inferring-species-trees). Academic Press. 2026:147–157. doi:https://doi.org/10.1016/B978-0-443-15750-9.00174-9 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://www.sciencedirect.com/science/chapter/referencework/abs/pii/B9780443157509001749?via%3Dihub) Species trees are a basic and common type of phylogenetic tree whose tips are species, population and lineages. Inferring species trees is a growing area of research that uses many classical methods of phylogenetic inference, such as Bayesian or maximum... - [ descriptionPublisher's Version](https://www.sciencedirect.com/science/chapter/referencework/abs/pii/B9780443157509001749?via%3Dihub) ### 2025 Orzechowski SC, Doudin D, Shams F, Schmitt J, Drew A, Wilson C, Joseph L, Ezaz T, Edward S V. [Neo-sex chromosomes track the mitochondrial phylogeny and exhibit an extensive added stratum of recombination suppression in honeyeaters (Aves: Meliphagidae)](https://doi.org/10.1093/gbe/evaf215). Genome Biology and Evolution. 2025;17(12). doi:https://doi.org/10.1093/gbe/evaf215 Orzechowski SC, Doudin D, Shams F, Schmitt J, Drew A, Wilson C, Joseph L, Ezaz T, Edward S V. [Neo-sex chromosomes track the mitochondrial phylogeny and exhibit an extensive added stratum of recombination suppression in honeyeaters (Aves: Meliphagidae)](https://doi.org/10.1093/gbe/evaf215). Genome Biology and Evolution. 2025;17(12). doi:https://doi.org/10.1093/gbe/evaf215 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://academic.oup.com/gbe/article/17/12/evaf215/8323801?guestAccessKey=) - [ picture\_as\_pdfPDF](/sites/g/files/omnuum6356/files/2026-05/evaf215.pdf) Mounting discoveries of avian neo-sex chromosomes are providing opportunities to understand the extent of variation in fundamental aspects of avian neo-sex chromosome evolution. We integrated cytogenetic data, long-read assemblies, and whole-genome... - [ descriptionPublisher's Version](https://academic.oup.com/gbe/article/17/12/evaf215/8323801?guestAccessKey=) - [ picture\_as\_pdfPDF](/sites/g/files/omnuum6356/files/2026-05/evaf215.pdf) Pegan TM, Sivakumar A, Burns C, Lopez KA, Fang B, Melendez NM, Bartel L, Edwards S V. [The value of structural variants to conservation genomics in the pangenome era](https://doi.org/10.1093/jhered/esaf098). Journal of Heredity. 2025. doi:https://doi.org/10.1093/jhered/esaf098 Pegan TM, Sivakumar A, Burns C, Lopez KA, Fang B, Melendez NM, Bartel L, Edwards S V. [The value of structural variants to conservation genomics in the pangenome era](https://doi.org/10.1093/jhered/esaf098). Journal of Heredity. 2025. doi:https://doi.org/10.1093/jhered/esaf098 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://academic.oup.com/jhered/advance-article/doi/10.1093/jhered/esaf098/8341471?guestAccessKey=) - [ picture\_as\_pdfPDF](/sites/g/files/omnuum6356/files/2026-05/esaf098.pdf) Structural variants (SVs) comprise an axis of genetic diversity with strong consequences for phenotype and fitness, making them a potentially important target for conservation genomics. Here, we review how and why SVs can play a role in conservation... - [ descriptionPublisher's Version](https://academic.oup.com/jhered/advance-article/doi/10.1093/jhered/esaf098/8341471?guestAccessKey=) - [ picture\_as\_pdfPDF](/sites/g/files/omnuum6356/files/2026-05/esaf098.pdf) Robinson BW, Kurtis S, Butcher BG, Edwards S V, Lovette IJ, Walsh J. [ The genomic basis of plumage polymorphism in the Eastern Screech-Owl (Megascops asio)](https://doi.org/10.1093/evolut/qpaf120). Evolution. 2025;79(9). doi:https://doi.org/10.1093/evolut/qpaf120 Robinson BW, Kurtis S, Butcher BG, Edwards S V, Lovette IJ, Walsh J. [ The genomic basis of plumage polymorphism in the Eastern Screech-Owl (Megascops asio)](https://doi.org/10.1093/evolut/qpaf120). Evolution. 2025;79(9). doi:https://doi.org/10.1093/evolut/qpaf120 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://academic.oup.com/evolut/article-abstract/79/9/1885/8155227) Understanding the genetic basis of polymorphic traits is useful for exploring the origin and maintenance of variable phenotypes. Previous work on color polymorphism in birds has evolved from targeting candidate genes to whole-genome scans, consequently... - [ descriptionPublisher's Version](https://academic.oup.com/evolut/article-abstract/79/9/1885/8155227) Khodaei M, Edwards S V, Beerli P. [Estimating Genome-Wide Phylogenies Using Probabilistic Topic Modeling ](https://doi.org/10.1093/sysbio/syaf015). Systematic Biology. 2025;74(5). doi:https://doi.org/10.1093/sysbio/syaf015 Khodaei M, Edwards S V, Beerli P. [Estimating Genome-Wide Phylogenies Using Probabilistic Topic Modeling ](https://doi.org/10.1093/sysbio/syaf015). Systematic Biology. 2025;74(5). doi:https://doi.org/10.1093/sysbio/syaf015 - add\_circle\_outline do\_not\_disturb\_on Abstract - [ descriptionPublisher's Version](https://academic.oup.com/sysbio/article/74/5/850/8125206?guestAccessKey=) - [ picture\_as\_pdfPDF](/sites/g/files/omnuum6356/files/2026-05/syaf015.pdf) Methods for rapidly inferring the evolutionary history of species or populations with genome-wide data are progressing, but computational constraints still limit our abilities in this area. We developed an alignment-free method to infer genome-wide... - [ descriptionPublisher's Version](https://academic.oup.com/sysbio/article/74/5/850/8125206?guestAccessKey=) - [ picture\_as\_pdfPDF](/sites/g/files/omnuum6356/files/2026-05/syaf015.pdf) Jindal G, Zhu M, Weksler N, Young J, Song B, Solvason J, Le S, Tabin C, Sackton T, Edwards S. [ Elucidating the Genetic Basis of Loss of Flight in the Emu, Dromaius novaehollandiae](https://doi.org/10.1002/jmor.70059). Journal of Morphology. 2025;286. doi:https://doi.org/10.1002/jmor.70059 Jindal G, Zhu M, Weksler N, Young J, Song B, Solvason J, Le S, Tabin C, Sackton T, Edwards S. [ Elucidating the Genetic Basis of Loss of Flight in the Emu, Dromaius novaehollandiae](https://doi.org/10.1002/jmor.70059). Journal of Morphology. 2025;286. doi:https://doi.org/10.1002/jmor.70059 - [ descriptionPublisher's Version](https://onlinelibrary.wiley.com/doi/10.1002/jmor.70059) - [ descriptionPublisher's Version](https://onlinelibrary.wiley.com/doi/10.1002/jmor.70059) - Previous page chevron\_left - [1](?page=0 "Current page") - [2](?page=1 "Go to page 2") - [3](?page=2 "Go to page 3") - [ Last page 24 ](?page=23 "Go to last page") - [ Next page chevron\_right ](?page=1 "Go to next page")